Главная
Study mode:
on
1
Intro
2
The basic problem
3
A larger set of problems
4
Reinventing the space
5
Summary
6
Calibration
7
Questions
8
Motivations
9
Complex prediction
10
Applications
11
Protein Complex Prediction
12
Modularity
13
Outliers
14
Inverse characteristics
15
Decals
16
Convergence characteristics
17
Fine tuning
18
Selfassessment
19
Learning secondary structure elements
20
Multiscale learning
21
Learning spatial dimensions
22
Learning PCA projections
23
Learning PCA projections independently
24
How well does a model generalize
25
Protein fault families
26
Local vs global aspects
Description:
Explore the groundbreaking OpenFold project in this 48-minute lecture by Mohammed AlQuraishi from Harvard Medical School. Delve into the lessons learned and insights gained from rebuilding and retraining AlphaFold2, a revolutionary tool in structural biology. Discover how OpenFold addresses limitations in the original implementation, including the lack of training code and data for new tasks, optimization for commercial hardware, and understanding of training data influence on accuracy. Gain valuable knowledge about the relationships between data size, diversity, and prediction accuracy, as well as insights into the protein folding learning process. Examine topics such as complex prediction, modularity, outliers, inverse characteristics, convergence characteristics, fine-tuning, and multiscale learning. Understand how the model generalizes across protein fault families and the interplay between local and global aspects of protein structure prediction.

OpenFold - Lessons and Insights From Rebuilding and Retraining AlphaFold2

Institute for Pure & Applied Mathematics (IPAM)
Add to list
0:00 / 0:00