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ICTP-SAIFR

Computational Biophysics Approaches to Mechanosensing

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Explore computational biophysics methods for understanding mechanosensing, focusing on cutting-edge approaches and their applications in molecular biology research.
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1 Lesons
44 minutes
On-Demand
Free-Video
Broad Institute

PROTPARDELLE: An All-Atom Protein Generative Model - Broad Institute Machine Learning in Drug Discovery Symposium 2023

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Explore PROTPARDELLE, an all-atom protein generative model, presented by Stanford's Possu Huang at the Broad Institute's Machine Learning in Drug Discovery Symposium.
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1 Lesons
22 minutes
On-Demand
Free-Video
Broad Institute

Alpha Missense: Proteome-Wide Missense Variant Effect Prediction

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Explore Alpha Missense, an AI model predicting missense variant pathogenicity. Learn how it combines structural context and evolutionary conservation to achieve state-of-the-art results in genetic benchmarks.
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1 Lesons
1 hour 23 minutes
On-Demand
Free-Video
ICTP-SAIFR

Protein Dynamics and the Brain

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Explore protein dynamics and their impact on brain function with insights from renowned expert Peter Wolynes of Rice University.
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1 Lesons
1 hour 14 minutes
On-Demand
Free-Video
ICTP-SAIFR

Uncovering Association Mechanisms and Functional Mechanisms of Intrinsically Disordered Proteins - Symposium Talks

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Explore intrinsically flexible proteins and their association mechanisms, and unravel functional mechanisms of intrinsically disordered proteins through energy landscape visualization.
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1 Lesons
1 hour 17 minutes
On-Demand
Free-Video
Manolis Kellis

Protein Structure with Transformers - Lecture 9

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Explore protein structure prediction using transformer models, uncovering advanced techniques for understanding and analyzing protein folding and interactions.
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1 Lesons
1 hour 22 minutes
On-Demand
Free-Video
MolSoft Molecules in Silico

Chemically Probing the Mechanism of KATP Channels

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Explore the mechanism of KATP channels through chemical probing, focusing on structure, gating, and the role of palmitoylation in channel opening.
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9 Lesons
28 minutes
On-Demand
Free-Video
MolSoft Molecules in Silico

How Molsoft Scarab Helped Fight COVID-19 in the UK

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Explore how Molsoft Scarab contributed to COVID-19 research in the UK, presented by Oxford's Dr. Brian Marsden at MolSoft's User Group Meeting.
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1 Lesons
30 minutes
On-Demand
Free-Video
Broad Institute

Computational Protein Design and De Novo Design of Proteins

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Explore computational approaches for designing functional proteins, including surface pattern analysis and de novo topology exploration, with applications in vaccine design, T-cell therapies, and biosensors.
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1 Lesons
1 hour 35 minutes
On-Demand
Free-Video
Broad Institute

Protein Design Using Deep Learning

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Dive into protein design using deep learning with David Baker. Explore cutting-edge techniques and insights at the intersection of AI and biomedical research.
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1 Lesons
52 minutes
On-Demand
Free-Video

Protein Structure Prediction

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Learn advanced protein structure prediction techniques, focusing on COVID-19 protease modeling, loop refinement, and homology modeling using MODELLER software.
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4 Lesons
30 minutes
On-Demand
Free-Video
Institute for Advanced Study

Physics of Functional Networks - Henrik Ronellenfitsch

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Explore the physics of functional networks, from sound control in mechanical systems to resilient power grids and leaf venation. Discover optimization principles and their applications in engineering and biology.
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24 Lesons
1 hour 17 minutes
On-Demand
Free-Video
Bioinformatics With BB

Protein-Protein Docking Tutorial for Beginners Using ClusPro, PatchDock, and Hex

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Learn to perform protein-protein docking using validated tools like ClusPro, PatchDock, and Hex. Gain hands-on experience with step-by-step demonstrations and access to relevant literature.
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11 Lesons
26 minutes
On-Demand
Free-Video
Bioinformatics With BB

PyMol Advanced Session: Protein-Ligand Interactions and Plugin Installation

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Explore advanced Pymol features: protein-ligand interactions, plugin installation, and protein annotations. Learn to visualize and analyze molecular structures effectively.
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21 Lesons
30 minutes
On-Demand
Free-Video
Bioinformatics With BB

Homology Modeling for Beginners - COVID-19 NP Protein Modeling with Modeller

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Learn homology modeling basics and hands-on pipeline using Modeller tool to construct atomic-resolution protein models from amino acid sequences and related homologous structures.
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7 Lesons
25 minutes
On-Demand
Free-Video
Materials Research Society

De Novo Protein Design Using Deep Learning and Musical Representations

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Explore innovative protein design using deep learning and musical representations, bridging materials science and artificial intelligence for groundbreaking bioengineering applications.
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1 Lesons
24 minutes
On-Demand
Free-Video
The Royal Institution

Understanding AlphaFold - AI in Protein Structure Prediction

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Explore AlphaFold's revolutionary impact on protein structure determination with Dame Janet Thornton. Discover how this AI program is transforming bioinformatics and its potential future applications.
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1 Lesons
43 minutes
On-Demand
Free-Video
The Royal Institution

A New Phase for Structural Biology - With Carol Robinson

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Explore Carol Robinson's groundbreaking research in structural biology, focusing on protein interactions in the vapor phase and its impact on understanding human health and drug development.
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31 Lesons
1 hour
On-Demand
Free-Video
Ambry Genetics

Using Structural Biology to Support Variant Assessment - Webinar - Ambry Genetics

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Explore structural biology's role in variant assessment, focusing on biophysical methods to evaluate protein function disruption and reclassify variants of unknown significance.
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19 Lesons
44 minutes
On-Demand
Free-Video
Simons Institute

Deep Learning in Structural Biology and Protein Design - How, Where, and Why

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Explore deep learning applications in structural biology and protein design, focusing on AlphaFold2 and emerging methods for visualizing proteins and creating novel ones for therapeutic use.
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1 Lesons
1 hour 13 minutes
On-Demand
Free-Video
Institute for Pure & Applied Mathematics (IPAM)

Spectral Decomposition of Atomic Structures in Heterogeneous Cryo-EM

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Innovative approach to recover 3D atomic structures of flexible macromolecules from cryo-EM data, combining biological knowledge with spectral analysis to estimate conformational variations.
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1 Lesons
51 minutes
On-Demand
Free-Video
Institute for Pure & Applied Mathematics (IPAM)

Inference Poses for Reconstruction of 3D Molecular Volumes from Cryo-EM Images

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Explore innovative techniques for reconstructing 3D molecular structures from cryo-EM data, focusing on the cryoAI algorithm that combines machine learning and physics-based approaches for efficient processing of large datasets.
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1 Lesons
46 minutes
On-Demand
Free-Video
Institute for Pure & Applied Mathematics (IPAM)

Molecular Structure Extrapolation to Zero Dose with CryoEM - IPAM at UCLA

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Explore zero-dose extrapolation in cryoEM, enhancing structural detail and insights into radiation damage for improved molecular visualization and atomic model refinement.
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1 Lesons
43 minutes
On-Demand
Free-Video
Ninja Nerd

Musculoskeletal System - Type I Muscle Fibers

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Explore the structural, metabolic, and functional characteristics of Type I (slow oxidative) muscle fibers in this comprehensive lecture on musculoskeletal physiology.
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1 Lesons
23 minutes
On-Demand
Free-Video
Institute for Pure & Applied Mathematics (IPAM)

OpenFold - Lessons and Insights From Rebuilding and Retraining AlphaFold2

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Insights from rebuilding AlphaFold2: OpenFold's optimized implementation, training process analysis, and implications for protein structure prediction and broader applications in structural biology.
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26 Lesons
48 minutes
On-Demand
Free-Video
Institute for Pure & Applied Mathematics (IPAM)

Pose Estimation, Temperature, Noise, and Biological Temperature Sensors via Cryo-EM

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Explore pose estimation, temperature, noise, and heterogeneity in cryo-EM for understanding biological temperature sensors, with focus on TRP channels and advanced analytical techniques.
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15 Lesons
48 minutes
On-Demand
Free-Video
Institute for Pure & Applied Mathematics (IPAM)

High Throughput, High Performance Algorithms for High Resolution Subtomogram Averaging

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Explore high-performance algorithms for subtomogram averaging in cryo-electron microscopy, focusing on tools like TomoBEAR and SUSAN to enhance throughput and resolution in structural biology.
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18 Lesons
47 minutes
On-Demand
Free-Video
The Rockefeller University

Antibody Therapeutics and Pathways to Prevention

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Explore cutting-edge antibody therapeutics and prevention strategies for COVID-19 with experts from Rockefeller University, discussing ongoing research and clinical efforts to combat the pandemic.
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5 Lesons
56 minutes
On-Demand
Free-Video
APS Physics

Momentum Grows for the African Light Source

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Explore the importance of an African Light Source for addressing challenges, developing skills, and driving innovation in science and technology across the continent.
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1 Lesons
1 hour 29 minutes
On-Demand
Free-Video
APS Physics

More Synchrotron Light for Latin America in the Greater Caribbean

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Explore the potential for expanding synchrotron light facilities in Latin America and the Caribbean, discussing scientific advancements, regional collaborations, and socioeconomic impacts.
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1 Lesons
1 hour 41 minutes
On-Demand
Free-Video
Materials Research Society

The Effect of Osmotic Pressure on Collagen Mimetic Sequences

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Groundbreaking analysis of collagen molecule behavior upon dehydration using collagen mimetic peptides. Reveals sequence-dependent elongation or contraction, crucial for understanding biological materials.
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1 Lesons
21 minutes
On-Demand
Free-Video
Simons Institute

The State of Protein Structure Prediction and Related Advancements

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Explore advancements in protein structure prediction, focusing on OpenFold's optimized implementation of AlphaFold2 and its implications for structural biology research.
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1 Lesons
1 hour 6 minutes
On-Demand
Free-Video
APS Physics

Neutron Scattering - Exploring Cell Membrane Mechanisms

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Neutron scattering techniques for studying cellular membrane structure and dynamics, focusing on model membrane systems and their interactions with biologically relevant molecules.
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1 Lesons
1 hour 11 minutes
On-Demand
Free-Video
USC Information Sciences Institute

AI in Structural Biology: Roots of Success

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Explore the history and impact of AI in protein structure prediction, focusing on AlphaFold 2's breakthrough and its implications for structural and cell biology research.
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1 Lesons
57 minutes
On-Demand
Free-Video
Valence Labs

Generalized Biomolecular Modeling and Design with RoseTTAFold All-Atom

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Explore advanced biomolecular modeling using RoseTTAFold All-Atom. Learn to predict and design complex biological assemblies, including proteins, nucleic acids, and small molecules, with applications in drug discovery and synthetic biology.
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10 Lesons
1 hour 5 minutes
On-Demand
Free-Video
Valence Labs

Protein Folding and Design - Day 5

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Explore protein folding and design techniques with Alex Tong, delving into advanced machine learning applications for drug discovery and structural biology.
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1 Lesons
1 hour 6 minutes
On-Demand
Free-Video
Valence Labs

OpenFold: Lessons Learned and Insights from Rebuilding and Retraining AlphaFold2

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Explore insights from rebuilding AlphaFold2, including performance analysis, learning mechanisms, and current progress in protein structure prediction.
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7 Lesons
39 minutes
On-Demand
Free-Video
Manolis Kellis

Protein Folding Algorithms - Lecture 9

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Explore protein folding algorithms, their applications, and computational approaches in structural biology and drug discovery.
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1 Lesons
1 hour 20 minutes
On-Demand
Free-Video
Labroots

Dynamics and Mechanisms of CRISPR-Cas9 Through the Lens of Computational Methods

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Explore computational methods revealing CRISPR-Cas9 dynamics and mechanisms, from RNA binding to large-scale conformational changes, enhancing understanding of this revolutionary genome-editing tool.
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4 Lesons
23 minutes
On-Demand
Free-Video
Center for Physical Genomics and Engineering

Cracking the Nuclear Codes: Finding Order in Chaos

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Explore interdisciplinary research blending virology, biology, and genomics to uncover genetic circuits in viral replication and cancer growth, with insights from the Salk Institute.
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1 Lesons
42 minutes
On-Demand
Free-Video
Valence Labs

gRNAde: Geometric Deep Learning for 3D RNA Inverse Design

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Explore gRNAde, a geometric deep learning pipeline for 3D RNA inverse design. Learn about its architecture, use cases, and advantages over traditional methods in RNA sequence design.
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7 Lesons
1 hour 6 minutes
On-Demand
Free-Video
Bogolyubov Institute for Theoretical Physics

Конформаційна гнучкість молекул поліамінів у комплексах з ДНК

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Дослідіть конформаційну гнучкість молекул поліамінів та їх взаємодію з ДНК через призму теоретичної фізики та молекулярного моделювання.
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1 Lesons
27 minutes
On-Demand
Free-Video
Valence Labs

Harnessing Geometric ML for Molecular Design - Day 3

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Explore geometric machine learning techniques for innovative molecular design in drug discovery with expert Michael Bronstein.
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1 Lesons
1 hour 8 minutes
On-Demand
Free-Video
Valence Labs

Geometric Deep Learning for Protein Understanding

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Explore geometric deep learning techniques for protein analysis and understanding, focusing on advanced computational methods in molecular biology.
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1 Lesons
46 minutes
On-Demand
Free-Video
Valence Labs

Accelerating Cryptic Pocket Discovery with Deep Learning

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Explore deep learning techniques for accelerating cryptic pocket discovery in protein structures, focusing on simulation, key degrees of freedom, and tools like PocketMiner and AlphaFold.
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8 Lesons
37 minutes
On-Demand
Free-Video
Centre International de Rencontres Mathématiques

Fast Structure and Positional Ortholog Searching and Viral Metagenome Assembly

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Explore fast structure searching, positional ortholog identification, and viral metagenome assembly techniques in bioinformatics and genomics research.
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1 Lesons
29 minutes
On-Demand
Free-Video
Conf42

Deep Learning for Protein Structure Prediction

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Explore deep learning techniques for predicting protein structures, from traditional methods to AlphaFold's advancements. Gain insights into molecular dynamics, homology modeling, and cutting-edge AI approaches in structural biology.
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17 Lesons
26 minutes
On-Demand
Free-Video
Conference GSI

A Study on the Covalent Geometry of Proteins and Its Impact on Distance Geometry

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Explore protein covalent geometry and its effects on distance geometry, gaining insights into molecular structures and interactions.
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1 Lesons
17 minutes
On-Demand
Free-Video
Conference GSI

Exploration of Conformations for an Intrinsically Disordered Protein

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Explore conformations of intrinsically disordered proteins, delving into their unique structural characteristics and functional implications in biological systems.
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1 Lesons
22 minutes
On-Demand
Free-Video
Conference GSI

Pseudo Dihedral Angles in Proteins - A New Description of the Ramachandran Map

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Explore a novel approach to protein structure analysis using pseudo dihedral angles, offering fresh insights into the Ramachandran map and its implications for protein folding.
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1 Lesons
21 minutes
On-Demand
Free-Video
Animated biology With arpan

Transmission Electron Microscopy (TEM) - Principles, Applications, and Limitations

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Explore transmission electron microscopy principles, applications, and limitations. Gain insights into this powerful imaging technique for studying cellular structures at high resolution.
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1 Lesons
11 minutes
On-Demand
Free-Video
Valence Labs

The Continuous Language of Protein Structure

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Explore a novel approach to protein structure generation using continuous autoregressive language models. Learn about innovative techniques for in silico protein design and their potential applications.
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9 Lesons
56 minutes
On-Demand
Free-Video
Center for Language & Speech Processing(CLSP), JHU

Deep Learning for Protein Structure Discovery

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Explore deep learning techniques for uncovering protein structures, revolutionizing molecular biology and drug discovery.
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1 Lesons
52 minutes
On-Demand
Free-Video
ATOMS UFRJ

Learning How to Build Molecules That Fold Like Proteins

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Explore protein-like molecule folding with Prof. Michael Shirts, uncovering insights into building and understanding complex molecular structures.
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1 Lesons
53 minutes
On-Demand
Free-Video
Centre International de Rencontres Mathématiques

Artificial Intelligence Captures Language of Life Written in Proteins

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Explore AI's role in decoding protein language, unveiling insights into life's fundamental processes and potential applications in genomics and biology.
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1 Lesons
36 minutes
On-Demand
Free-Video
Erwin Schrödinger International Institute for Mathematics and Physics (ESI)

Force Spectroscopy Sheds Light on the Structure and Dynamics of Nucleosomes

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Explore force spectroscopy's insights into nucleosome structure and dynamics, revealing chromatin's complex behavior at the molecular level.
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1 Lesons
36 minutes
On-Demand
Free-Video
Probabilistic AI School

Probabilistic Machine Learning in Bioinformatics

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Explore probabilistic machine learning applications in bioinformatics, focusing on cutting-edge techniques and their impact on biological data analysis.
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1 Lesons
59 minutes
On-Demand
Free-Video
Raman Research Institute

Neutrons in Biology

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Discover how neutrons are used to study biological systems and their applications in understanding cellular structures and biomolecular interactions through expert insights.
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1 Lesons
1 hour 12 minutes
On-Demand
Free-Video
Institute for Pure & Applied Mathematics (IPAM)

Does Life Compute? Understanding Protein Folding and Biomolecular Assembly

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Explore the mathematical structures behind protein folding and biomolecular assembly, examining computational approaches and theoretical models that illuminate life's fundamental processes.
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1 Lesons
46 minutes
On-Demand
Free-Video
Bioinformatics With BB

Artificial Intelligence for Protein Modeling - DNA, RNA and Ion Docking Explained

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Discover how AlphaFold3 revolutionizes structural biology through AI-powered protein modeling, enabling accurate predictions of 3D molecular structures, DNA/RNA interactions, and protein-protein binding mechanisms.
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1 Lesons
20 minutes
On-Demand
Free-Video