Главная
Study mode:
on
1
Intro
2
Metagenomics approaches
3
Overview of metagenomics workflow steps
4
Questions metagenomics analysis help to answer?
5
Case study and study design
6
About BioBam
7
Exploring OmicsBox
8
Downloading metagenomics data
9
Performing QC on raw reads using FastQC
10
Assessing FastQC report in OmicsBox
11
QC Fail: Per Sequence GC Content
12
QC Fail: Per Base Sequence Content
13
Trimming reads using Trimmomatic
14
Assessing Trimmomatic report in OmicsBox
15
Post-trimming QC
16
Performing Taxonomic classification using Kraken 2
17
Exploring Kraken 2 report
18
Krona Charts to visualize taxonomic classification
19
Principle Coordinate Analysis
20
Stacked bar charts to visualize relative abundances of taxa
21
Differential Abundance Analysis of taxa
Description:
Explore metagenomics analysis and taxonomic classification using Kraken 2 in BioBam's OmicsBox tool in this 42-minute video tutorial. Learn about targeted sequencing and shotgun WGS approaches, metagenomics workflows, and research applications. Follow a case study demonstrating study design and practical analysis steps. Witness quality control, pre-processing, taxonomic classification, and output interpretation on the OmicsBox platform. Gain insights into FastQC reports, read trimming with Trimmomatic, Kraken 2 classification, and visualization techniques like Krona charts, principle coordinate analysis, and stacked bar charts. Conclude with an overview of differential abundance analysis for taxa.

Metagenomics Taxonomic Classification Using Kraken 2 in OmicsBox

Bioinformagician
Add to list