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1
Intro
2
Why do we want to do this
3
Proteins
4
Directed Evolution
5
How to think about this
6
First approach
7
Modelbased optimization
8
Distribution estimation
9
Challenges
10
Black Holes
11
Panda
12
Gibbon
13
Banana
14
Image Generation
15
Simulations
16
Model Based Optimization
17
Collaborations
18
Extrapolation
19
Domain Adaptation
20
Uncertainty Calibration
21
Deep Neural Networks
22
Expectationmaximization
Description:
Explore machine learning-based approaches for designing proteins and small molecules in this 46-minute lecture by Jennifer Listgarten from UC Berkeley. Delve into the motivations behind this research and its applications in directed evolution. Examine various methodologies, including model-based optimization and distribution estimation, while addressing challenges such as black holes and extrapolation. Discover how concepts from image generation and simulations are applied to protein design. Learn about collaborations in the field, domain adaptation techniques, and the importance of uncertainty calibration in deep neural networks. Gain insights into expectation-maximization algorithms and their role in advancing protein engineering and small molecule design.

Machine Learning-Based Design of Proteins and Small Molecules

Simons Institute
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