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1
StatQuest: A gentle introduction to RNA-seq
2
StatQuest: A gentle introduction to ChIP-Seq
3
StatQuest: Principal Component Analysis (PCA), Step-by-Step
4
StatQuest: PCA in R
5
StatQuest: PCA in Python
6
RPKM, FPKM and TPM, Clearly Explained!!!
7
StatQuest: MDS and PCoA
8
StatQuest: t-SNE, Clearly Explained
9
StatQuest: Hierarchical Clustering
10
Drawing and Interpreting Heatmaps
11
StatQuest: DESeq2, part 1, Library Normalization
12
StatQuest: edgeR, part 1, Library Normalization
13
StatQuest: edgeR and DESeq2, part 2 - Independent Filtering
14
StatQuest: MDS and PCoA in R
15
StatQuest: P Values, clearly explained
16
False Discovery Rates, FDR, clearly explained
17
Fisher's Exact Test and the Hypergeometric Distribution
18
StatQuest: RNA-seq - the problem with technical replicates
19
StatQuest: Logs (logarithms), clearly explained
20
StatQuest: PCA main ideas in only 5 minutes!!!
21
Principal Component Analysis (PCA) clearly explained (2015)
22
StatQuest: Linear Models Pt.1 - Linear Regression
23
StatQuest: Linear Regression in R
24
StatQuest: Linear Models Pt.2 - t-tests and ANOVA
25
StatQuest: Linear Models Pt.3 - Design Matrices (old version)
26
StatQuest: Linear Models Pt.3 - Design Matrix Examples in R
27
StatQuest: K-means clustering
Description:
Dive into a comprehensive 6-hour playlist covering essential topics in high-throughput sequence analysis. Learn about RNA-seq, ChIP-Seq, Principal Component Analysis (PCA), normalization techniques, statistical methods, and data visualization. Explore concepts such as RPKM, FPKM, TPM, MDS, PCoA, t-SNE, hierarchical clustering, and heatmaps. Gain insights into DESeq2, edgeR, independent filtering, p-values, false discovery rates, and Fisher's Exact Test. Understand the challenges of technical replicates in RNA-seq, logarithms, linear models, t-tests, ANOVA, design matrices, and K-means clustering. Master practical applications using R and Python for various analyses in this in-depth exploration of high-throughput sequencing techniques.

High Throughput Sequencing

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