Bacterial Genomics
Dive into an extensive 8-hour bioinformatics tutorial covering bacterial genomics, designed for beginners. Learn genome comparison techniques using BRIG software, explore genome assembly and annotation processes for both Illumina and Nanopore reads using tools like SPAdes and FLYE, and master bacterial genome analysis through comparative genomics. Gain hands-on experience with genome annotation using Prokka and PGAP, create phylogenetic trees using MUSCLE, PHYML, and RAxML, and visualize results with iTOL. Discover how to identify insertion sequence elements, antimicrobial resistance genes, and virulence factors in genomes using tools like ISfinder and Abricate. Practice genome visualization techniques with CGView and Artemis (DNAPlotter), and delve into pangenome analysis of bacterial genomes. Develop skills in variant calling using Snippy and explore microbial bioinformatics concepts throughout this comprehensive course offered by Bioinformatics Coach.