VCF File Manipulation

VCF File Manipulation

Learn to manipulate VCF (Variant Call Format) files using bcftools in this comprehensive bioinformatics tutorial. Master essential techniques including reading, indexing, and extracting information from VCF files. Explore methods for counting variants, renaming chromosomes, and splitting files based on sample IDs. Gain practical skills in variant calling using tools like Snippy and BCFTOOLS, and discover how to perform advanced operations such as separating SNPs and indels. Ideal for beginners and intermediate learners looking to enhance their bioinformatics skills in genomic data analysis.