Explore a cutting-edge approach to pathogen detection in this 43-minute conference talk from the Computational Genomics Summer Institute (CGSI) 2023. Delve into the innovative SwabSeq technology, a sequencing-based method for detecting pathogens, with a focus on its application in SARS-CoV-2 testing. Learn about the massively scaled-up testing capabilities of SwabSeq, which utilizes next-generation sequencing of pooled and barcoded nasal and saliva samples. Discover how this method has revolutionized COVID-19 testing, offering high-throughput capabilities while maintaining quality through lean principles. Gain insights into the potential of this technology for detecting other pathogens and its implications for future pandemic preparedness and response.