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1
Introduction
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Outline
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Causal Inference
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Notations
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Observations
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Assumptions
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Logistic regression
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Randomized control trial
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Inverse probability weighting
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Causal assumptions
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Summary
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Differential Expression Analysis
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Cellular Context
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Biological Covariates
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Singlecell Data
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Pipeline
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Pipeline of Singlecell Analysis
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Singlecell Mixture Model
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T cell study
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Self annotation
Description:
Explore causal inference in single-cell genomics through this research seminar presented by Yongjin Park from the University of British Columbia. Delve into the unique aspects of single-cell RNA-seq data and discover how statisticians can leverage its special structure. Learn about a novel algorithm for ascertaining the effect of disease status on cell-type-specific gene expression profiles, and gain insights into various causal effect inference strategies. Examine scalable approaches for cell type assignment and the integration of single-cell data with existing tissue-level bulk data. Uncover how this integrative analysis provides high-resolution, cell-type-level views of complex disease mechanisms in genome-wide association studies. The seminar covers topics such as differential expression analysis, cellular context, biological covariates, single-cell mixture models, and self-annotation techniques.

Causal Inference in Single-cell Genomics - Machine Learning in Computational Biology

Paul G. Allen School
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