Phylogenetics Problem Given a collection of species, find the tree that explains their history.
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Applications of Phylogenetics
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Phylogenetics Methodologies Traditional Method: Clacistics
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Using Sequence Data to Build Trees
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Algebraic Perspective on Phylogenetic Models
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Phylogenetic Algebraic Geometry
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Using Phylogenetic Invariants to Reconstruct Trees
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SVDQuartets (Chitman, Kubatko, Long)
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Identifiability of Phylogenetic Models
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Geometric Perspective on Identifiability
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Generic Identifiability
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Proving Identifiability with Algebraic Geometry
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Phylogenetic Models are Identifiable
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Gluing Two Trees at a Leaf
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Gluing more complex graphs
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Group-based models
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Equations for the CFN Model
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Buczynska-Wisniewski Theorem
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The Hilbert Scheme
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Summary
Description:
Explore phylogenetic algebraic geometry in this 58-minute lecture by Seth Sullivant from North Carolina State University. Delve into the phylogenetics problem of finding trees that explain species history, and discover various applications and methodologies. Learn about using sequence data to build trees, the algebraic perspective on phylogenetic models, and how to use phylogenetic invariants for tree reconstruction. Examine the SVDQuartets method and the identifiability of phylogenetic models from a geometric perspective. Investigate the process of gluing trees and graphs, group-based models, and equations for the CFN Model. Gain insights into the Buczynska-Wisniewski Theorem and the Hilbert Scheme as they relate to phylogenetic algebraic geometry.