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Intro
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Bioconductor and Docker
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Docker community All-hands Dec 2021
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Big picture
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Scientists should do science
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Infrastructure and dependency management
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Test environment
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Bioconductor package binaries
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Cloud deployment of analysis environment
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Build dependencies into the container
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Ease of use
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Docker Hub
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Microsoft container registry
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Adoption at scale on other open source projects
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How to containerize Build system? ?
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Questions?
Description:
Explore a 21-minute conference talk from the Docker Community All-Hands event in December 2021, focusing on the integration of Docker with Bioconductor for genomic data analysis. Learn how containerization addresses complex dependency issues in bioinformatics software, enabling efficient distribution of pre-built dependencies and production-ready package binaries. Discover the benefits of using Docker for Bioconductor, including improved user experience, streamlined data analysis, and enhanced educational capabilities. Gain insights into the broader impact of containerization on open-source projects and infrastructure management in scientific computing. Understand how Docker simplifies the deployment of analysis environments, facilitates testing, and supports cloud-based workflows for genomic research.

Docker and Bioconductor - Delivering Containerized Open-Source Genomic Data Analysis Software

Docker
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